Eupolybothruscavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data
Identifieur interne : 000345 ( Main/Exploration ); précédent : 000344; suivant : 000346Eupolybothruscavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data
Auteurs : Pavel Stoev [Bulgarie] ; Ana Komeri Ki [Croatie] ; Nesrine Akkari [Danemark] ; Shanlin Liu [République populaire de Chine] ; Xin Zhou [République populaire de Chine] ; Alexander M. Weigand [Allemagne, Croatie] ; Jeroen Hostens [Belgique] ; Christopher I. Hunter [République populaire de Chine] ; Scott C. Edmunds [République populaire de Chine] ; David Porco [France] ; Marzio Zapparoli [Italie] ; Teodor Georgiev [Bulgarie] ; Daniel Mietchen [Allemagne, Bulgarie] ; David Roberts [Royaume-Uni] ; Sarah Faulwetter [Grèce] ; Vincent Smith [Royaume-Uni] ; Lyubomir Penev [Bulgarie]Source :
- Biodiversity Data Journal [ 1314-2836 ] ; 2013.
Abstract
We demonstrate how a classical taxonomic description of a new species can be enhanced by applying new generation molecular methods, and novel computing and imaging technologies. A cave-dwelling centipede,
Url:
DOI: 10.3897/BDJ.1.e1013
PubMed: 24723752
PubMed Central: 3964625
Affiliations:
- Allemagne, Belgique, Bulgarie, Croatie, Danemark, France, Grèce, Italie, Royaume-Uni, République populaire de Chine
- Angleterre, Berlin, Grand Londres, Guangdong, Hovedstaden, Sofia-ville (oblast)
- Berlin, Copenhague, Londres, Shenzhen, Sofia
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000328
- to stream Pmc, to step Curation: 000328
- to stream Pmc, to step Checkpoint: 000299
- to stream Ncbi, to step Merge: 000235
- to stream Ncbi, to step Curation: 000235
- to stream Ncbi, to step Checkpoint: 000235
- to stream Main, to step Merge: 000345
- to stream Main, to step Curation: 000345
Le document en format XML
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(<named-content content-type="taxon-name"><named-content content-type="classis">Chilopoda</named-content></named-content>: <named-content content-type="taxon-name"><named-content content-type="ordo">Lithobiomorpha</named-content></named-content>: <named-content content-type="taxon-name"><named-content content-type="familia">Lithobiidae</named-content></named-content>): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data</title><author><name sortKey="Stoev, Pavel" sort="Stoev, Pavel" uniqKey="Stoev P" first="Pavel" last="Stoev">Pavel Stoev</name><affiliation wicri:level="3"><nlm:aff id="A1"><addr-line>National Museum of Natural History, Sofia, Bulgaria</addr-line></nlm:aff><country xml:lang="fr">Bulgarie</country><wicri:regionArea>National Museum of Natural History, Sofia</wicri:regionArea><placeName><settlement type="city">Sofia</settlement><region nuts="2">Sofia-ville (oblast)</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="A2"><addr-line>Pensoft Publishers, Sofia, Bulgaria</addr-line></nlm:aff><country xml:lang="fr">Bulgarie</country><wicri:regionArea>Pensoft Publishers, Sofia</wicri:regionArea><placeName><settlement type="city">Sofia</settlement><region nuts="2">Sofia-ville (oblast)</region></placeName></affiliation></author><author><name sortKey="Komeri Ki, Ana" sort="Komeri Ki, Ana" uniqKey="Komeri Ki A" first="Ana" last="Komeri Ki">Ana Komeri Ki</name><affiliation wicri:level="1"><nlm:aff id="A3"><addr-line>Croatian Biospeleological Society, Zagreb, Croatia</addr-line></nlm:aff><country xml:lang="fr">Croatie</country><wicri:regionArea>Croatian Biospeleological Society, Zagreb</wicri:regionArea><wicri:noRegion>Zagreb</wicri:noRegion></affiliation></author><author><name sortKey="Akkari, Nesrine" sort="Akkari, Nesrine" uniqKey="Akkari N" first="Nesrine" last="Akkari">Nesrine Akkari</name><affiliation wicri:level="3"><nlm:aff id="A4"><addr-line>Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark</addr-line></nlm:aff><country xml:lang="fr">Danemark</country><wicri:regionArea>Natural History Museum of Denmark, University of Copenhagen, Copenhagen</wicri:regionArea><placeName><settlement type="city">Copenhague</settlement><region type="région" nuts="2">Hovedstaden</region></placeName></affiliation></author><author><name sortKey="Liu, Shanlin" sort="Liu, Shanlin" uniqKey="Liu S" first="Shanlin" last="Liu">Shanlin Liu</name><affiliation wicri:level="3"><nlm:aff id="A5"><addr-line>China National GeneBank, BGI-Shenzhen, Shenzhen, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>China National GeneBank, BGI-Shenzhen, Shenzhen</wicri:regionArea><placeName><settlement type="city">Shenzhen</settlement><region type="province">Guangdong</region></placeName></affiliation></author><author><name sortKey="Zhou, Xin" sort="Zhou, Xin" uniqKey="Zhou X" first="Xin" last="Zhou">Xin Zhou</name><affiliation wicri:level="3"><nlm:aff id="A5"><addr-line>China National GeneBank, BGI-Shenzhen, Shenzhen, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>China National GeneBank, BGI-Shenzhen, Shenzhen</wicri:regionArea><placeName><settlement type="city">Shenzhen</settlement><region type="province">Guangdong</region></placeName></affiliation></author><author><name sortKey="Weigand, Alexander M" sort="Weigand, Alexander M" uniqKey="Weigand A" first="Alexander M." last="Weigand">Alexander M. Weigand</name><affiliation wicri:level="1"><nlm:aff id="A6"><addr-line>Goethe-University, Institute for Ecology, Evolution and Diversity, Frankfurt am Main, Germany</addr-line></nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Goethe-University, Institute for Ecology, Evolution and Diversity, Frankfurt am Main</wicri:regionArea><wicri:noRegion>Frankfurt am Main</wicri:noRegion><wicri:noRegion>Frankfurt am Main</wicri:noRegion><wicri:noRegion>Frankfurt am Main</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A3"><addr-line>Croatian Biospeleological Society, Zagreb, Croatia</addr-line></nlm:aff><country xml:lang="fr">Croatie</country><wicri:regionArea>Croatian Biospeleological Society, Zagreb</wicri:regionArea><wicri:noRegion>Zagreb</wicri:noRegion></affiliation></author><author><name sortKey="Hostens, Jeroen" sort="Hostens, Jeroen" uniqKey="Hostens J" first="Jeroen" last="Hostens">Jeroen Hostens</name><affiliation wicri:level="1"><nlm:aff id="A7"><addr-line>Bruker microCT, Kontich, Belgium</addr-line></nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Bruker microCT, Kontich</wicri:regionArea><wicri:noRegion>Kontich</wicri:noRegion></affiliation></author><author><name sortKey="Hunter, Christopher I" sort="Hunter, Christopher I" uniqKey="Hunter C" first="Christopher I." last="Hunter">Christopher I. Hunter</name><affiliation wicri:level="1"><nlm:aff id="A8"><addr-line>GigaScience, BGI HK Ltd., Tai Po, Hong Kong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>GigaScience, BGI HK Ltd., Tai Po, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Edmunds, Scott C" sort="Edmunds, Scott C" uniqKey="Edmunds S" first="Scott C." last="Edmunds">Scott C. Edmunds</name><affiliation wicri:level="1"><nlm:aff id="A8"><addr-line>GigaScience, BGI HK Ltd., Tai Po, Hong Kong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>GigaScience, BGI HK Ltd., Tai Po, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Porco, David" sort="Porco, David" uniqKey="Porco D" first="David" last="Porco">David Porco</name><affiliation wicri:level="1"><nlm:aff id="A9"><addr-line>Université de Rouen - Laboratoire ECODIV, Mont Saint Aignan Cedex, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Université de Rouen - Laboratoire ECODIV, Mont Saint Aignan Cedex</wicri:regionArea><wicri:noRegion>Mont Saint Aignan Cedex</wicri:noRegion><wicri:noRegion>Mont Saint Aignan Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Zapparoli, Marzio" sort="Zapparoli, Marzio" uniqKey="Zapparoli M" first="Marzio" last="Zapparoli">Marzio Zapparoli</name><affiliation wicri:level="1"><nlm:aff id="A10"><addr-line>Università degli Studi della Tuscia, Department for Innovation in Biological, Agro-food and Forest systems (DIBAF), Viterbo, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Università degli Studi della Tuscia, Department for Innovation in Biological, Agro-food and Forest systems (DIBAF), Viterbo</wicri:regionArea><wicri:noRegion>Viterbo</wicri:noRegion></affiliation></author><author><name sortKey="Georgiev, Teodor" sort="Georgiev, Teodor" uniqKey="Georgiev T" first="Teodor" last="Georgiev">Teodor Georgiev</name><affiliation wicri:level="3"><nlm:aff id="A2"><addr-line>Pensoft Publishers, Sofia, Bulgaria</addr-line></nlm:aff><country xml:lang="fr">Bulgarie</country><wicri:regionArea>Pensoft Publishers, Sofia</wicri:regionArea><placeName><settlement type="city">Sofia</settlement><region nuts="2">Sofia-ville (oblast)</region></placeName></affiliation></author><author><name sortKey="Mietchen, Daniel" sort="Mietchen, Daniel" uniqKey="Mietchen D" first="Daniel" last="Mietchen">Daniel Mietchen</name><affiliation wicri:level="3"><nlm:aff id="A11"><addr-line>Museum für Naturkunde – Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Berlin, Germany</addr-line></nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Museum für Naturkunde – Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="A2"><addr-line>Pensoft Publishers, Sofia, Bulgaria</addr-line></nlm:aff><country xml:lang="fr">Bulgarie</country><wicri:regionArea>Pensoft Publishers, Sofia</wicri:regionArea><placeName><settlement type="city">Sofia</settlement><region nuts="2">Sofia-ville (oblast)</region></placeName></affiliation></author><author><name sortKey="Roberts, David" sort="Roberts, David" uniqKey="Roberts D" first="David" last="Roberts">David Roberts</name><affiliation wicri:level="3"><nlm:aff id="A12"><addr-line>The Natural History Museum, London, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The Natural History Museum, London</wicri:regionArea><placeName><settlement type="city">Londres</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Londres</region></placeName></affiliation></author><author><name sortKey="Faulwetter, Sarah" sort="Faulwetter, Sarah" uniqKey="Faulwetter S" first="Sarah" last="Faulwetter">Sarah Faulwetter</name><affiliation wicri:level="1"><nlm:aff id="A13"><addr-line>National and Kapodestrian University of Athens, Athens, Greece</addr-line></nlm:aff><country xml:lang="fr">Grèce</country><wicri:regionArea>National and Kapodestrian University of Athens, Athens</wicri:regionArea><wicri:noRegion>Athens</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A14"><addr-line>Hellenic Centre for Marine Research, Heraklion, Greece</addr-line></nlm:aff><country xml:lang="fr">Grèce</country><wicri:regionArea>Hellenic Centre for Marine Research, Heraklion</wicri:regionArea><wicri:noRegion>Heraklion</wicri:noRegion></affiliation></author><author><name sortKey="Smith, Vincent" sort="Smith, Vincent" uniqKey="Smith V" first="Vincent" last="Smith">Vincent Smith</name><affiliation wicri:level="3"><nlm:aff id="A12"><addr-line>The Natural History Museum, London, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The Natural History Museum, London</wicri:regionArea><placeName><settlement type="city">Londres</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Londres</region></placeName></affiliation></author><author><name sortKey="Penev, Lyubomir" sort="Penev, Lyubomir" uniqKey="Penev L" first="Lyubomir" last="Penev">Lyubomir Penev</name><affiliation wicri:level="3"><nlm:aff id="A15"><addr-line>Institute of Biodiversity & Ecosystem Research - Bulgarian Academy of Sciences and Pensoft Publishers, Sofia, Bulgaria</addr-line></nlm:aff><country xml:lang="fr">Bulgarie</country><wicri:regionArea>Institute of Biodiversity & Ecosystem Research - Bulgarian Academy of Sciences and Pensoft Publishers, Sofia</wicri:regionArea><placeName><settlement type="city">Sofia</settlement><region nuts="2">Sofia-ville (oblast)</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24723752</idno><idno type="pmc">3964625</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964625</idno><idno type="RBID">PMC:3964625</idno><idno type="doi">10.3897/BDJ.1.e1013</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000328</idno><idno 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(<named-content content-type="taxon-name"><named-content content-type="classis">Chilopoda</named-content></named-content>: <named-content content-type="taxon-name"><named-content content-type="ordo">Lithobiomorpha</named-content></named-content>: <named-content content-type="taxon-name"><named-content content-type="familia">Lithobiidae</named-content></named-content>): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data</title><author><name sortKey="Stoev, Pavel" sort="Stoev, Pavel" uniqKey="Stoev P" first="Pavel" last="Stoev">Pavel Stoev</name><affiliation wicri:level="3"><nlm:aff id="A1"><addr-line>National Museum of Natural History, Sofia, Bulgaria</addr-line></nlm:aff><country xml:lang="fr">Bulgarie</country><wicri:regionArea>National Museum of Natural History, Sofia</wicri:regionArea><placeName><settlement type="city">Sofia</settlement><region nuts="2">Sofia-ville (oblast)</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="A2"><addr-line>Pensoft Publishers, Sofia, Bulgaria</addr-line></nlm:aff><country xml:lang="fr">Bulgarie</country><wicri:regionArea>Pensoft Publishers, Sofia</wicri:regionArea><placeName><settlement type="city">Sofia</settlement><region nuts="2">Sofia-ville (oblast)</region></placeName></affiliation></author><author><name sortKey="Komeri Ki, Ana" sort="Komeri Ki, Ana" uniqKey="Komeri Ki A" first="Ana" last="Komeri Ki">Ana Komeri Ki</name><affiliation wicri:level="1"><nlm:aff id="A3"><addr-line>Croatian Biospeleological Society, Zagreb, Croatia</addr-line></nlm:aff><country xml:lang="fr">Croatie</country><wicri:regionArea>Croatian Biospeleological Society, Zagreb</wicri:regionArea><wicri:noRegion>Zagreb</wicri:noRegion></affiliation></author><author><name sortKey="Akkari, Nesrine" sort="Akkari, Nesrine" uniqKey="Akkari N" first="Nesrine" last="Akkari">Nesrine Akkari</name><affiliation wicri:level="3"><nlm:aff id="A4"><addr-line>Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark</addr-line></nlm:aff><country xml:lang="fr">Danemark</country><wicri:regionArea>Natural History Museum of Denmark, University of Copenhagen, Copenhagen</wicri:regionArea><placeName><settlement type="city">Copenhague</settlement><region type="région" nuts="2">Hovedstaden</region></placeName></affiliation></author><author><name sortKey="Liu, Shanlin" sort="Liu, Shanlin" uniqKey="Liu S" first="Shanlin" last="Liu">Shanlin Liu</name><affiliation wicri:level="3"><nlm:aff id="A5"><addr-line>China National GeneBank, BGI-Shenzhen, Shenzhen, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>China National GeneBank, BGI-Shenzhen, Shenzhen</wicri:regionArea><placeName><settlement type="city">Shenzhen</settlement><region type="province">Guangdong</region></placeName></affiliation></author><author><name sortKey="Zhou, Xin" sort="Zhou, Xin" uniqKey="Zhou X" first="Xin" last="Zhou">Xin Zhou</name><affiliation wicri:level="3"><nlm:aff id="A5"><addr-line>China National GeneBank, BGI-Shenzhen, Shenzhen, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>China National GeneBank, BGI-Shenzhen, Shenzhen</wicri:regionArea><placeName><settlement type="city">Shenzhen</settlement><region type="province">Guangdong</region></placeName></affiliation></author><author><name sortKey="Weigand, Alexander M" sort="Weigand, Alexander M" uniqKey="Weigand A" first="Alexander M." last="Weigand">Alexander M. Weigand</name><affiliation wicri:level="1"><nlm:aff id="A6"><addr-line>Goethe-University, Institute for Ecology, Evolution and Diversity, Frankfurt am Main, Germany</addr-line></nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Goethe-University, Institute for Ecology, Evolution and Diversity, Frankfurt am Main</wicri:regionArea><wicri:noRegion>Frankfurt am Main</wicri:noRegion><wicri:noRegion>Frankfurt am Main</wicri:noRegion><wicri:noRegion>Frankfurt am Main</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A3"><addr-line>Croatian Biospeleological Society, Zagreb, Croatia</addr-line></nlm:aff><country xml:lang="fr">Croatie</country><wicri:regionArea>Croatian Biospeleological Society, Zagreb</wicri:regionArea><wicri:noRegion>Zagreb</wicri:noRegion></affiliation></author><author><name sortKey="Hostens, Jeroen" sort="Hostens, Jeroen" uniqKey="Hostens J" first="Jeroen" last="Hostens">Jeroen Hostens</name><affiliation wicri:level="1"><nlm:aff id="A7"><addr-line>Bruker microCT, Kontich, Belgium</addr-line></nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Bruker microCT, Kontich</wicri:regionArea><wicri:noRegion>Kontich</wicri:noRegion></affiliation></author><author><name sortKey="Hunter, Christopher I" sort="Hunter, Christopher I" uniqKey="Hunter C" first="Christopher I." last="Hunter">Christopher I. Hunter</name><affiliation wicri:level="1"><nlm:aff id="A8"><addr-line>GigaScience, BGI HK Ltd., Tai Po, Hong Kong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>GigaScience, BGI HK Ltd., Tai Po, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Edmunds, Scott C" sort="Edmunds, Scott C" uniqKey="Edmunds S" first="Scott C." last="Edmunds">Scott C. Edmunds</name><affiliation wicri:level="1"><nlm:aff id="A8"><addr-line>GigaScience, BGI HK Ltd., Tai Po, Hong Kong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>GigaScience, BGI HK Ltd., Tai Po, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Porco, David" sort="Porco, David" uniqKey="Porco D" first="David" last="Porco">David Porco</name><affiliation wicri:level="1"><nlm:aff id="A9"><addr-line>Université de Rouen - Laboratoire ECODIV, Mont Saint Aignan Cedex, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Université de Rouen - Laboratoire ECODIV, Mont Saint Aignan Cedex</wicri:regionArea><wicri:noRegion>Mont Saint Aignan Cedex</wicri:noRegion><wicri:noRegion>Mont Saint Aignan Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Zapparoli, Marzio" sort="Zapparoli, Marzio" uniqKey="Zapparoli M" first="Marzio" last="Zapparoli">Marzio Zapparoli</name><affiliation wicri:level="1"><nlm:aff id="A10"><addr-line>Università degli Studi della Tuscia, Department for Innovation in Biological, Agro-food and Forest systems (DIBAF), Viterbo, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Università degli Studi della Tuscia, Department for Innovation in Biological, Agro-food and Forest systems (DIBAF), Viterbo</wicri:regionArea><wicri:noRegion>Viterbo</wicri:noRegion></affiliation></author><author><name sortKey="Georgiev, Teodor" sort="Georgiev, Teodor" uniqKey="Georgiev T" first="Teodor" last="Georgiev">Teodor Georgiev</name><affiliation wicri:level="3"><nlm:aff id="A2"><addr-line>Pensoft Publishers, Sofia, Bulgaria</addr-line></nlm:aff><country xml:lang="fr">Bulgarie</country><wicri:regionArea>Pensoft Publishers, Sofia</wicri:regionArea><placeName><settlement type="city">Sofia</settlement><region nuts="2">Sofia-ville (oblast)</region></placeName></affiliation></author><author><name sortKey="Mietchen, Daniel" sort="Mietchen, Daniel" uniqKey="Mietchen D" first="Daniel" last="Mietchen">Daniel Mietchen</name><affiliation wicri:level="3"><nlm:aff id="A11"><addr-line>Museum für Naturkunde – Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Berlin, Germany</addr-line></nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Museum für Naturkunde – Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="A2"><addr-line>Pensoft Publishers, Sofia, Bulgaria</addr-line></nlm:aff><country xml:lang="fr">Bulgarie</country><wicri:regionArea>Pensoft Publishers, Sofia</wicri:regionArea><placeName><settlement type="city">Sofia</settlement><region nuts="2">Sofia-ville (oblast)</region></placeName></affiliation></author><author><name sortKey="Roberts, David" sort="Roberts, David" uniqKey="Roberts D" first="David" last="Roberts">David Roberts</name><affiliation wicri:level="3"><nlm:aff id="A12"><addr-line>The Natural History Museum, London, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The Natural History Museum, London</wicri:regionArea><placeName><settlement type="city">Londres</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Londres</region></placeName></affiliation></author><author><name sortKey="Faulwetter, Sarah" sort="Faulwetter, Sarah" uniqKey="Faulwetter S" first="Sarah" last="Faulwetter">Sarah Faulwetter</name><affiliation wicri:level="1"><nlm:aff id="A13"><addr-line>National and Kapodestrian University of Athens, Athens, Greece</addr-line></nlm:aff><country xml:lang="fr">Grèce</country><wicri:regionArea>National and Kapodestrian University of Athens, Athens</wicri:regionArea><wicri:noRegion>Athens</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A14"><addr-line>Hellenic Centre for Marine Research, Heraklion, Greece</addr-line></nlm:aff><country xml:lang="fr">Grèce</country><wicri:regionArea>Hellenic Centre for Marine Research, Heraklion</wicri:regionArea><wicri:noRegion>Heraklion</wicri:noRegion></affiliation></author><author><name sortKey="Smith, Vincent" sort="Smith, Vincent" uniqKey="Smith V" first="Vincent" last="Smith">Vincent Smith</name><affiliation wicri:level="3"><nlm:aff id="A12"><addr-line>The Natural History Museum, London, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The Natural History Museum, London</wicri:regionArea><placeName><settlement type="city">Londres</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Londres</region></placeName></affiliation></author><author><name sortKey="Penev, Lyubomir" sort="Penev, Lyubomir" uniqKey="Penev L" first="Lyubomir" last="Penev">Lyubomir Penev</name><affiliation wicri:level="3"><nlm:aff id="A15"><addr-line>Institute of Biodiversity & Ecosystem Research - Bulgarian Academy of Sciences and Pensoft Publishers, Sofia, Bulgaria</addr-line></nlm:aff><country xml:lang="fr">Bulgarie</country><wicri:regionArea>Institute of Biodiversity & Ecosystem Research - Bulgarian Academy of Sciences and Pensoft Publishers, Sofia</wicri:regionArea><placeName><settlement type="city">Sofia</settlement><region nuts="2">Sofia-ville (oblast)</region></placeName></affiliation></author></analytic><series><title level="j">Biodiversity Data Journal</title><idno type="ISSN">1314-2836</idno><idno type="eISSN">1314-2828</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><label>Abstract</label><p>We demonstrate how a classical taxonomic description of a new species can be enhanced by applying new generation molecular methods, and novel computing and imaging technologies. A cave-dwelling centipede, <italic><named-content content-type="taxon-name"><named-content content-type="genus">Eupolybothrus</named-content><named-content content-type="species">cavernicolus</named-content></named-content></italic> Komerički & Stoev sp. n. (<named-content content-type="taxon-name"><named-content content-type="classis">Chilopoda</named-content></named-content>: <named-content content-type="taxon-name"><named-content content-type="ordo">Lithobiomorpha</named-content></named-content>: <named-content content-type="taxon-name"><named-content content-type="familia">Lithobiidae</named-content></named-content>), found in a remote karst region in Knin, Croatia, is the first eukaryotic species for which, in addition to the traditional morphological description, we provide a fully sequenced transcriptome, a DNA barcode, detailed anatomical X-ray microtomography (micro-CT) scans, and a movie of the living specimen to document important traits of its ex-situ behaviour. By employing micro-CT scanning in a new species for the first time, we create a high-resolution morphological and anatomical dataset that allows virtual reconstructions of the specimen and subsequent interactive manipulation to test the recently introduced ‘cybertype’ notion. In addition, the transcriptome was recorded with a total of 67,785 scaffolds, having an average length of 812 bp and N50 of 1,448 bp (see GigaDB). Subsequent annotation of 22,866 scaffolds was conducted by tracing homologs against current available databases, including Nr, SwissProt and COG. This pilot project illustrates a workflow of producing, storing, publishing and disseminating large data sets associated with a description of a new taxon. All data have been deposited in publicly accessible repositories, such as GigaScience GigaDB, NCBI, BOLD, Morphbank and Morphosource, and the respective open licenses used ensure their accessibility and re-usability.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Balmford, Andrew" uniqKey="Balmford A">Andrew Balmford</name></author><author><name sortKey="Green, Rhys E" uniqKey="Green R">Rhys E. Green</name></author><author><name sortKey="Jenkins, Martin" uniqKey="Jenkins M">Martin Jenkins</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Birney, E" uniqKey="Birney E">E. 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Raven</name></author><author><name sortKey="Solis, M A" uniqKey="Solis M">M. A. Solis</name></author><author><name sortKey="Valdecasas, A G" uniqKey="Valdecasas A">A. G. Valdecasas</name></author><author><name sortKey="Leeuw, S Van Der" uniqKey="Leeuw S">S. Van Der Leeuw</name></author><author><name sortKey="Vasco, A" uniqKey="Vasco A">A. Vasco</name></author><author><name sortKey="Vermeulen, N" uniqKey="Vermeulen N">N. Vermeulen</name></author><author><name sortKey="Vogel, J" uniqKey="Vogel J">J. Vogel</name></author><author><name sortKey="Walls, R L" uniqKey="Walls R">R. L. Walls</name></author><author><name sortKey="Wilson, E O" uniqKey="Wilson E">E. O. Wilson</name></author><author><name sortKey="Woolley, J B" uniqKey="Woolley J">J. B. Woolley</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wojcieszek, J M" uniqKey="Wojcieszek J">J. M. Wojcieszek</name></author><author><name sortKey="Austin, P" uniqKey="Austin P">P. 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Simmons</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Xie, Y" uniqKey="Xie Y">Y Xie</name></author><author><name sortKey="Wu, G" uniqKey="Wu G">G Wu</name></author><author><name sortKey="Tang, J" uniqKey="Tang J">J Tang</name></author><author><name sortKey="Luo, R" uniqKey="Luo R">R Luo</name></author><author><name sortKey="Patterson, J" uniqKey="Patterson J">J Patterson</name></author><author><name sortKey="Liu, S" uniqKey="Liu S">S Liu</name></author><author><name sortKey="Huang, W" uniqKey="Huang W">W Huang</name></author><author><name sortKey="He, G" uniqKey="He G">G He</name></author><author><name sortKey="Gu, S" uniqKey="Gu S">S Gu</name></author><author><name sortKey="Li, S" uniqKey="Li S">S Li</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zapparoli, M" uniqKey="Zapparoli M">M Zapparoli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zapparoli, M" uniqKey="Zapparoli M">M Zapparoli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zapparoli, M" uniqKey="Zapparoli M">M Zapparoli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zapparoli, M" uniqKey="Zapparoli M">M Zapparoli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zapparoli, M" uniqKey="Zapparoli M">M Zapparoli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zapparoli, M" uniqKey="Zapparoli M">M Zapparoli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zapparoli, M" uniqKey="Zapparoli M">M Zapparoli</name></author><author><name sortKey="Edgecombe, G" uniqKey="Edgecombe G">G Edgecombe</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zapparoli, M" uniqKey="Zapparoli M">M Zapparoli</name></author><author><name sortKey="Edgecombe, G" uniqKey="Edgecombe G">G Edgecombe</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ziegler, Alexander" uniqKey="Ziegler A">Alexander Ziegler</name></author><author><name sortKey="Faber, Cornelius" uniqKey="Faber C">Cornelius Faber</name></author><author><name sortKey="Mueller, Susanne" uniqKey="Mueller S">Susanne Mueller</name></author><author><name sortKey="Bartolomaeus, Thomas" uniqKey="Bartolomaeus T">Thomas Bartolomaeus</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ziegler, Alexander" uniqKey="Ziegler A">Alexander Ziegler</name></author><author><name sortKey="Ogurreck, Malte" uniqKey="Ogurreck M">Malte Ogurreck</name></author><author><name sortKey="Steinke, Thomas" uniqKey="Steinke T">Thomas Steinke</name></author><author><name sortKey="Beckmann, Felix" uniqKey="Beckmann F">Felix Beckmann</name></author><author><name sortKey="Prohaska, Steffen" uniqKey="Prohaska S">Steffen Prohaska</name></author><author><name sortKey="Ziegler, Andreas" uniqKey="Ziegler A">Andreas Ziegler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zimmermann, Dominique" uniqKey="Zimmermann D">Dominique Zimmermann</name></author><author><name sortKey="Randolf, Susanne" uniqKey="Randolf S">Susanne Randolf</name></author><author><name sortKey="Metscher, Brian D" uniqKey="Metscher B">Brian D. Metscher</name></author><author><name sortKey="Aspock, Ulrike" uniqKey="Aspock U">Ulrike Aspöck</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Belgique</li><li>Bulgarie</li><li>Croatie</li><li>Danemark</li><li>France</li><li>Grèce</li><li>Italie</li><li>Royaume-Uni</li><li>République populaire de Chine</li></country><region><li>Angleterre</li><li>Berlin</li><li>Grand Londres</li><li>Guangdong</li><li>Hovedstaden</li><li>Sofia-ville (oblast)</li></region><settlement><li>Berlin</li><li>Copenhague</li><li>Londres</li><li>Shenzhen</li><li>Sofia</li></settlement></list><tree><country name="Bulgarie"><region name="Sofia-ville (oblast)"><name sortKey="Stoev, Pavel" sort="Stoev, Pavel" uniqKey="Stoev P" first="Pavel" last="Stoev">Pavel Stoev</name></region><name sortKey="Georgiev, Teodor" sort="Georgiev, Teodor" uniqKey="Georgiev T" first="Teodor" last="Georgiev">Teodor Georgiev</name><name sortKey="Mietchen, Daniel" sort="Mietchen, Daniel" uniqKey="Mietchen D" first="Daniel" last="Mietchen">Daniel Mietchen</name><name sortKey="Penev, Lyubomir" sort="Penev, Lyubomir" uniqKey="Penev L" first="Lyubomir" last="Penev">Lyubomir Penev</name><name sortKey="Stoev, Pavel" sort="Stoev, Pavel" uniqKey="Stoev P" first="Pavel" last="Stoev">Pavel Stoev</name></country><country name="Croatie"><noRegion><name sortKey="Komeri Ki, Ana" sort="Komeri Ki, Ana" uniqKey="Komeri Ki A" first="Ana" last="Komeri Ki">Ana Komeri Ki</name></noRegion><name sortKey="Weigand, Alexander M" sort="Weigand, Alexander M" uniqKey="Weigand A" first="Alexander M." last="Weigand">Alexander M. Weigand</name></country><country name="Danemark"><region name="Hovedstaden"><name sortKey="Akkari, Nesrine" sort="Akkari, Nesrine" uniqKey="Akkari N" first="Nesrine" last="Akkari">Nesrine Akkari</name></region></country><country name="République populaire de Chine"><region name="Guangdong"><name sortKey="Liu, Shanlin" sort="Liu, Shanlin" uniqKey="Liu S" first="Shanlin" last="Liu">Shanlin Liu</name></region><name sortKey="Edmunds, Scott C" sort="Edmunds, Scott C" uniqKey="Edmunds S" first="Scott C." last="Edmunds">Scott C. Edmunds</name><name sortKey="Hunter, Christopher I" sort="Hunter, Christopher I" uniqKey="Hunter C" first="Christopher I." last="Hunter">Christopher I. Hunter</name><name sortKey="Zhou, Xin" sort="Zhou, Xin" uniqKey="Zhou X" first="Xin" last="Zhou">Xin Zhou</name></country><country name="Allemagne"><noRegion><name sortKey="Weigand, Alexander M" sort="Weigand, Alexander M" uniqKey="Weigand A" first="Alexander M." last="Weigand">Alexander M. Weigand</name></noRegion><name sortKey="Mietchen, Daniel" sort="Mietchen, Daniel" uniqKey="Mietchen D" first="Daniel" last="Mietchen">Daniel Mietchen</name></country><country name="Belgique"><noRegion><name sortKey="Hostens, Jeroen" sort="Hostens, Jeroen" uniqKey="Hostens J" first="Jeroen" last="Hostens">Jeroen Hostens</name></noRegion></country><country name="France"><noRegion><name sortKey="Porco, David" sort="Porco, David" uniqKey="Porco D" first="David" last="Porco">David Porco</name></noRegion></country><country name="Italie"><noRegion><name sortKey="Zapparoli, Marzio" sort="Zapparoli, Marzio" uniqKey="Zapparoli M" first="Marzio" last="Zapparoli">Marzio Zapparoli</name></noRegion></country><country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Roberts, David" sort="Roberts, David" uniqKey="Roberts D" first="David" last="Roberts">David Roberts</name></region><name sortKey="Smith, Vincent" sort="Smith, Vincent" uniqKey="Smith V" first="Vincent" last="Smith">Vincent Smith</name></country><country name="Grèce"><noRegion><name sortKey="Faulwetter, Sarah" sort="Faulwetter, Sarah" uniqKey="Faulwetter S" first="Sarah" last="Faulwetter">Sarah Faulwetter</name></noRegion><name sortKey="Faulwetter, Sarah" sort="Faulwetter, Sarah" uniqKey="Faulwetter S" first="Sarah" last="Faulwetter">Sarah Faulwetter</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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